Else Kröner Forschungskolleg Ulm

"Implementation of personalized tumour therapy into practice by optimizing predictive biomarker and model systems" - POTENTIAL

Modern precision oncology aims to provide each patient with the right therapy at the right time. However, predictive biomarkers are often lacking, and the high molecular heterogeneity as well as therapy-associated tumor evolution make this concept realizable for only a small fraction of patients, particularly in the case of solid tumors. Therefore, there is a significant need for new, immediately translatable predictive technologies. The overarching scientific theme of the program is the implementation of new predictive models for precision oncology. To achieve this, organoid systems, the isolation and analysis of circulating tumor cells, and genetic analyses at the single-cell level will be combined for immediate scientific-clinical application.

The University of Ulm has long held a strong international profile in the field of oncological diseases. The scientific approaches bundled within the Comprehensive Cancer Center Ulm, a leading oncology center, focus on patient-oriented research questions investigated in multicenter studies. The University of Ulm is a pioneer in the molecular characterization of hematological-oncological neoplasms and the identification of new prognostic-predictive markers and resistance mechanisms in these diseases. The targeted application of OMICS technologies, led by tumor DNA sequencing, represents a key advancement in realizing "personalized oncology."

 

Speakers

Prof. Dr. med. Alexander Kleger
Prof. Dr. med. Thomas Seufferlein
Dr. med. Michael Melzer, Klinik für Urologie

Clinician Scientists

Dr.med. Anna Melzer

Clinic of Internal Medicine I

Dr.med. Alica Beutel

Clinic of Internal Medicine I

Dr.med. Erik Rasbach

Department of Visceral Surgery

Dr.med. 

Clinic of 

Dr.med. Yanchun Ma 

Clinic of Urology

Dr.med. 

Clinic of 

Dr. med. Anna Melzer, Clinic of Internal Medicine I

EXocrine Pancreatic Insufficiency and Enzyme Replacement Therapy in Pancreatic Cancer Patients: Impact on Fecal Microbiome, Nutritional Status, Quality of Life, and Survival (EXPERT Study)

This clinical-translational project aims to investigate the impact of exocrine pancreatic insufficiency (EPI), pancreatic enzyme replacement therapy (PERT), sarcopenia, and fecal microbiome dynamics on the quality of life and survival of patients with metastatic, unresectable pancreatic adenocarcinoma (PDAC) in UICC stage IV. The ultimate goal is to provide data that can inform and enhance current German clinical guidelines for the diagnosis and management of this specific patient group. The project comprises three key components:

1.Retrospective Data Collection: 

This component analyses patient records from University Hospital Ulm to determine the prevalence of EPI and the use of PERT in patients with unresectable PDAC, establishing baseline data on current management practices and outcomes.

2. Survey Study: 

A nationwide survey of German physicians and PDAC patients to evaluate the current care landscape for PDAC with EPI. This survey will provide insights into clinical practices, challenges, and patient experiences.

3. Prospective Multicenter Cohort Study: 

This study examines the effects of EPI and PERT on quality of life, nutritional status, fecal microbiome, and survival in PDAC patients. The plan includes evaluating quality of life, collecting biomaterials (blood and stool), and assessing sarcopenia through clinical and radiological methods at various time points. Involving multiple centres, the study aims to generate robust data on the clinical benefits of PERT and other factors influencing quality of life and survival in unresectable PDAC.
 

 

Graphical overview of the EXPERT study. The central section schematically illustrates the hypothesis-generating assumptions: The possible influences of exocrine pancreatic insufficiency on the nutritional status and progression of pancreatic cancer are presented in the form of a vicious circle. The substitution of pancreatic enzymes - according to one of the main hypotheses - could mitigate this vicious circle. The left side highlights the key questions the study aims to address, while the right side lists the essential methods. At the bottom, a simplified workflow depicts the planned CT scans and collection of various biomaterials at different time points following diagnosis. Abbreviations: AEs, adverse events; BIA, bioimpedance analysis; CT, computed tomography; ct-DNA, circulating tumor DNA; ECOG, Eastern Cooperative Oncology Group; EPI, exocrine pancreatic insufficiency; PERT, pancreatic enzyme replacement therapy; QoL, quality of life; UICC, Union for International Cancer Control. This Graphical abstract was created with BioRender.com.

Dr.med. Erik Rasbach, Department of Visceral Surgery

Therapy-resistance assessed and predicted by pancreatic cancer organoids

 

 

 

 

 

 

 

 

 

Dr.med. Yanchun Ma, Clinic of Urology

Establishment of Urothelial Carcinoma Assembloids for Investigating Immune Checkpoint Inhibitor and Antibody-Drug Conjugate-Mediated Therapy Response

Urothelial carcinoma is the second most prevalent malignancy of the urogenital system. The prognosis for patients with locally advanced or metastatic urothelial carcinoma remains poor. While cisplatin and gemcitabine have been the standard first-line therapy for metastatic urothelial carcinoma for over 20 years, recent results from a Phase III clinical trial have demonstrated a significant improvement in progression-free survival with a combination of the antibody-drug conjugate (ADC) enfortumab vedotin and the PD-1 checkpoint inhibitor pembrolizumab, prompting a paradigm shift in first-line treatment. 

Despite improved survival rates, not all patients respond to these novel therapeutic combinations. To date, no in vitro test system has been established for therapeutics with complex molecular mechanisms, such as immune checkpoint inhibitors (ICI) or ADC. However, multicellular assembloids could serve as predictive models for individual therapeutic response. Following the successful implementation and application of urothelial carcinoma organoids for pharmacotyping with chemotherapeutics in our clinic, we now aim to develop a multicellular assembloid model system to enable the in vitro testing of therapeutics such as ICI and ADC.

Initially, T cells derived from healthy donors will be co-cultured with urothelial carcinoma organoids from our organoid biobank at varying ratios. After optimizing culture conditions and determining the ideal T cell-to-organoid ratios, potential alterations in T cell phenotypes and activation states will be investigated. Additionally, the expression of immune checkpoints on immune and tumor cells (PD-1/PD-L1, CTLA-4) will be assessed.

Subsequently, ADC and/or ICI treatments will be applied to the multicellular assembloid model system. Cytotoxicity analyses will be conducted using flow cytometry and immunohistology, and dose-response curves will be generated. Organoids will then be classified into resistant, intermediate or sensitive groups using the Jenks natural breaks method.

In the final step, the in vitro therapy response to the tested treatments will be compared with the actual clinical result of patients to assess the validity of the in vitro test model as a predictive tool for therapeutic efficacy.

 

 

 

 

 

Scientific proceedings

  • 2025.01.28, 09:00 - Webinar - „Wie sich Forschungsfrage und Sekundärdatennutzung gegenseitig beeinflussen“,
  • Online-Weiterbildungsangebote der Mediziniformatik-Initiative (MII) für Clinician Scientists
  • CSP Seminars, every second Wednesday, at 17:00

Publications

Coordination office

Priv.Doz. Dr. rer. nat. Ninel Azoitei

Institut für Molekulare Onkologie und Stammzellbiologie

e-mail: ninel.azoitei@uni-ulm.de

Phone: +49 - 731 - 500 45763

Alumni

Dr. med. Benedikt Heitmeir

Dr. med. Julia Maier

Dr. med. Yazid Resheq

Dr. med. Yuanna Lin

Dr. med. Michael Melzer

Dr. med. Christopher Hofmann